Examples
Presentations about Colmena, examples of using Colmena in the scientific literature, and in other open-source codes.
Presentations
Presentations focused on Colmena’s design or how to use it
Publications
Improvements to Colmena
Papers about improving the performance or utility of Colmena
Ward et al. “Employing artificial intelligence to steer exascale workflows with colmena” The International Journal of High Performance Computing Applications [paper <https://doi.org/10.1177/10943420241288242>](https://doi.org/10.1177/10943420241288242)
Ward et al. “Colmena: Scalable Machine-Learning-Based Steering of Ensemble Simulations for High Performance Computing”. 2021 IEEE/ACM Workshop on Machine Learning in High Performance Computing Environments (MLHPC) [paper] [ArXiv] [slides] [YouTube]
Ward et al. “Cloud Services Enable Efficient AI-Guided Simulation Workflows across Heterogeneous Resources”. Heterogenous Computing Workshop at IPDPS 2023 [ArXiv] [slides] [YouTube]
Applications of Colmena
Papers where Colmena was used
Guo et al. “Composition-transferable machine learning potential for LiCl-KCl molten salts validated by high-energy x-ray diffraction” Physical Review B [paper] [ChemRxiv]
Zvyagin et al. “GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics.” [bioRxiv]
Dharuman et al. “Protein Generation via Genome-scale Language Models with Bio-physical Scoring” [SC-W ‘23]
Open-Source Software
Other codes which use Colmena
ExaMol: Performs molecule design on HPC by combining AI and quantum chemistry (same devs as Colmena)